Bc. Martin Beľa

Master's thesis

Chromatin Visualization in Jupyter Notebook and VR

Chromatin Visualization in Jupyter Notebook and VR
Abstract:
Cieľom mojej práce je vizualizácia chromatínu, ktorá zobrazuje polohy segmentov chromatínu predpovedaných zo vzdialeností medzi segmentmi generovanými metódou Hi-C. Táto vizualizácia je integrovaná do notebooku Jupyter, čo umožňuje súčasnú vizualizáciu, predspracovanie údajov a analýzu v rámci jednej platformy. Okrem toho bolo vytvorené VR zobrazenie, ktoré je plynule spojené s vizualizáciou v Jupyter …more
Abstract:
The aim of my thesis was to develop a chromatin visualization that displays the positions of chromatin segments predicted from distances between segments generated by the Hi-C method. The visualization is integrated into Jupyter Notebook, which allows for simultaneous visualization, data preprocessing, and analysis within the same platform. Additionally, a VR view was developed. It is seamlessly connected …more
 
 
Language used: English
Date on which the thesis was submitted / produced: 21. 5. 2024

Thesis defence

  • Date of defence: 17. 6. 2024
  • Supervisor: RNDr. Jan Byška, Ph.D.
  • Reader: RNDr. Filip Opálený

Citation record

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Institution archiving the thesis and making it accessible: Masarykova univerzita, Fakulta informatiky

Masaryk University

Faculty of Informatics

Master programme / field:
Visual informatics / Computer graphics and visualisation