Zpět na vyhledávání

Ivan Vanát

Bachelor's thesis

Optimalizace programu TE-nester pro vyhledávání fragmentovaných transpozonů

Improvements of TE-nester, a software tool for nested transposon identification
Abstract:
TE-nester je nástroj schopný vyhľadávať retrotranspozóny ako aj ich zanorenie. Tento program využíva de-novo detekciu LTR retrotranspozónov narozdiel od programov s obdobnou funkcionalitou. V tejto práci, predstavujeme vylepšenú verziu tohto nástroja ako napríklad kvalitnejšie výstupy, anotácia elementov a podpora multithreadingu. Všetky vylepšenia boli testované na syntetických ako aj reálnych biologických …more
Abstract:
TE-nester is a tool capable of not only retrotransposon discovery but also their nesting. It is an already existing program that utilizes a greedy algorithm combined with a de-novo long terminal repeat retrotransposon discovery, an approach that is different compared to the competitors. In this work, we present an improved version of said software with improved quality of outputs, implemented annotation …more
 

Keywords

TE-nester LTR retrotransposons nesting greedy algorithm transposon detection
 
Language used: English
Date on which the thesis was submitted / produced: 16. 12. 2019
Identifier: https://is.muni.cz/th/zkmv6/

Thesis defence

  • Date of defence: 13. 2. 2020
  • Supervisor: Ing. Matej Lexa, Ph.D.
  • Reader: RNDr. David Šafránek, Ph.D.

Citation record

Cite this text

Full text of thesis

Contents of on-line thesis archive
Published in Theses:
  • světu
Other ways of accessing the text
Institution archiving the thesis and making it accessible: Masarykova univerzita, Fakulta informatiky
Složka Reference to the local database directory of the institution

Masaryk University

Faculty of Informatics

Bachelor programme / field:
Applied Informatics / Bioinformatics

Theses on a related topic

List of theses with an identical keyword.
  • No theses on a related topic available.