Bc. Martin Jediný

Bachelor's thesis

Replication of PDB validation server functionality in the MetaCentrum environment

Replication of PDB validation server functionality in the MetaCentrum environment
Abstract:
Kontrola kvality biomakromolekulárnych štruktúr (modely bielkovín, nukleových kyselín a polysacharidov) získaných použitím experimentálnych metód je dôležitým krokom pri vyvodzovaní záverov v štrukturálnej biológii. Je to tiež jedným z dôvodov prečo validácia štruktúr je nutnou súčasťou depozičného procesu Protein Data Bank (PDB). PDB poskytuje aj validačnú službu, ktorá je využívaná na iteratívnu …more
Abstract:
Assessing the quality of biomacromolecular structural models (models of proteins, nucleic acids, and polysaccharides) acquired using experimental methods is a vital step in making inferences in structural biology. That is also why the validation of structures is an obligatory step in the Protein Data Bank's (PDB) deposition process. To allow structural biologists to refine their structures, the PDB …more
 

Keywords

Protein Data Bank PDB biomacromolecules MolProbity proteins nucleic acids Kubernetes bioinformatics validation
 
Language used: English
Date on which the thesis was submitted / produced: 23. 5. 2024
Identifier: https://is.muni.cz/th/ejxw0/

Thesis defence

  • Date of defence: 26. 6. 2024
  • Supervisor: Mgr. Vladimír Horský, Ph.D.
  • Reader: doc. RNDr. Radka Svobodová, Ph.D.

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Institution archiving the thesis and making it accessible: Masarykova univerzita, Fakulta informatiky
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Masaryk University

Faculty of Informatics

Bachelor programme / field:
Programming and development / Programming and development

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