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Bc. Oskár Adam Válent

Master's thesis

Rust library for SBML model manipulation

Rust library for SBML model manipulation
Abstract:
Existuje už niekoľko Rust knižníc pre spracovanie SBML (Systems Biology Markup Language) dokumentov, napriek tomu stále neexistuje Rust knižnica, ktorá by ponúkala plnú podporu pre všetky SBML core funkcionality. V tejto diplomovej práci predstavujeme novú Rust knižnicu, biodivine-lib-sbml, ktorá poskytuje plnú podporu core funkcionalít pre štandard SBML Level 3 Version 2. S našou knižnicou používatelia …more
Abstract:
Several Rust libraries for manipulating SBML (Systems Biology Markup Language) documents already exist; however, a comprehensive Rust library offering a full range of core SBML features remains to be developed. In this thesis, we introduce biodivine-lib-sbml, a new Rust library that fully supports all core features of SBML Level 3 Version 2. With biodivine-lib-sbml, users can read, modify, write, build …more
 

Keywords

Systems Biology Computational Biology Systems Biology Markup Language SBML XML Rust Library
 
Language used: English
Date on which the thesis was submitted / produced: 21. 5. 2024
Identifier: https://is.muni.cz/th/jupu6/

Thesis defence

  • Date of defence: 17. 6. 2024
  • Supervisor: RNDr. Samuel Pastva, Ph.D.
  • Reader: RNDr. Matej Troják, Ph.D.

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Institution archiving the thesis and making it accessible: Masarykova univerzita, Fakulta informatiky
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Masaryk University

Faculty of Informatics

Master programme / field:
Software Engineering / Design and development of software systems

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