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Bc. Jakub Kiska

Master's thesis

GPU acceleration of the continuous heterogeneity analysis in Xmipp

GPU acceleration of the continuous heterogeneity analysis in Xmipp
Abstract:
Kryoelektrónová mikroskopia je aktuálne jednou z najúspešnejších metód na stanovenie 3D usporiadania molekúl živých buniek. Dáta z mikroskopu sú spracovávané počítačmi za účelom zníženia šumu a rekonštrukcie objemu skúmaného vzorku. Hlavným cieľom tejto práce je akcelerácia nového algoritmu vyvinutého na rekonštrukciu 3D objemu z heterogénnych vzoriek získaných pomocou kryoelektrónovej mikroskopie …more
Abstract:
Cryo-electron microscopy is currently one of the most successful methods to determine the 3D arrangement of living cell molecules. Computers process data obtained from a microscope to reduce the noise and reconstruct the volume representing the sample. The primary goal of this thesis is to accelerate a novel algorithm developed for the reconstruction of 3D volume from heterogeneous samples obtained …more
 

Keywords

Cryo-EM CUDA GPU ZART Xmipp
 
Language used: English
Date on which the thesis was submitted / produced: 16. 5. 2023
Identifier: https://is.muni.cz/th/bv4h6/

Thesis defence

  • Date of defence: 21. 6. 2023
  • Supervisor: RNDr. Jiří Filipovič, Ph.D.
  • Reader: Mgr. Aleš Křenek, Ph.D.

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Institution archiving the thesis and making it accessible: Masarykova univerzita, Fakulta informatiky
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Masaryk University

Faculty of Informatics

Master programme / field:
Software Engineering / Design and development of software systems

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