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Bc. Jakub Vallo

Master's thesis

Detekce asymetrických tunelů v proteinech pomocí Voroného diagramu

Detection of asymmetric tunnels in proteins using Voronoi diagram
Abstract:
Proteíny sú obrovské makromolekuly, ktoré sa zúčastňujú na veľkom množstve katalytických reakcií v ľudskom tele. Funkcia proteínu je vo veľkej miere určená jeho štruktúrou a regiónom zvaným aktívne miesto. Tieto aktívne miesta sa obyčajne nachádzaju hlboko v molekule proteínu prístupné iba cez volné vstupy zvané tunely. V tejto práci preskúmame aktuálne dostupné algoritmy na detekciu tunelov v proteínoch …more
Abstract:
Proteins are large macromolecules involved in a vast array of catalytic reactions in our bodies. The function of a protein is mainly determined by its structure and a special region called an active site. These active sites are usually buried deep inside the protein molecule accessible only by void paths, i.e., tunnels. In this thesis we examine currently available algorithms for the detection of tunnels …more
 

Keywords

protein active site tunnel asymmetric tunnel Voronoi diagram Voronoi face CAVER
 
Language used: English
Date on which the thesis was submitted / produced: 4. 1. 2017
Identifier: https://is.muni.cz/th/kd15d/

Thesis defence

  • Date of defence: 9. 2. 2017
  • Supervisor: RNDr. Adam Jurčík, Ph.D.
  • Reader: doc. RNDr. Barbora Kozlíková, Ph.D.

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Institution archiving the thesis and making it accessible: Masarykova univerzita, Fakulta informatiky
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Masaryk University

Faculty of Informatics

Master programme / field:
Applied Informatics / Applied Informatics

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