Assembly and annotation of a mitochondrial genome of kinetoplastid protist Perkinsela

Vojtěch DAVID

Bakalářská práce

Abstract:

This thesis is based on a collaborative project between Laboratory of Molecular Biology of Protists led by Prof. Julius Lukeš and the laboratory of John Archibald (Department of Biochemistry & Molecular Biology, Dalhousie University, Canada). My contribution to the project, as the name of the thesis suggests is to process DNA and RNA sequencing data from Neoparamoeba pemaquidensis isolate that correspond to the mitochondrion of Perkinsela, also called Ichthyobodo-related organism (IRO). The main aim is to characterize mitochondrial gene content and to attempt to understand the mechanism of U-insertion/deletion RNA editing in Perkinsela and its evolution.

Abstract:

This thesis is based on a collaborative project between Laboratory of Molecular Biology of Protists led by Prof. Julius Lukeš and the laboratory of John Archibald (Department of Biochemistry & Molecular Biology, Dalhousie University, Canada). My contribution to the project, as the name of the thesis suggests is to process DNA and RNA sequencing data from Neoparamoeba pemaquidensis isolate that correspond to the mitochondrion of Perkinsela, also called Ichthyobodo-related organism (IRO). The main aim is to characterize mitochondrial gene content and to attempt to understand the mechanism of U-insertion/deletion RNA editing in Perkinsela and its evolution.

Keywords

Prkinsela, Perkinsiella, IRO, Ichthyobodo-related organism, gemone, RNA editing, mitochondrie, kinetoplast, endosymbiont, Neoparamoeba pemaquidensis

Jazyk práce: angličtina

Datum vytvoření / odevzdání či podání práce: 26. 4. 2013

Zveřejnit od: 26. 4. 2013

Obhajoba závěrečné práce

• Vedoucí: MSc. Pavel Flegontov, Ph.D.

JIHOČESKÁ UNIVERZITA V ČESKÝCH BUDĚJOVICÍCH

Přírodovědecká fakulta

Bakalářský studijní program / obor:
Biologie / Biologie