Bioinformatic determination of the contamination in environmental DNA from water

Max HÖLLER

Bakalářská práce

Bioinformatic determination of the contamiantion in environmental DNA from water

Abstract:

The aim of the study is to analyse raw sequences gained during the collection of environmental DNA from water. The samples were collected from different water environments during different seasons. The used vertebrate-specific primers amplify not only fish but other vertebrates and bacteria. The ratio and diversity of the groups detected in different campaigns are important for stakeholders for efficient utilisation of the method for biodiversity monitoring.

Abstract:

The aim of the study is to analyse raw sequences gained during the collection of environmental DNA from water. The samples were collected from different water environments during different seasons. The used vertebrate-specific primers amplify not only fish but other vertebrates and bacteria. The ratio and diversity of the groups detected in different campaigns are important for stakeholders for efficient utilisation of the method for biodiversity monitoring.

Keywords

eDNA, Metabarcoding, fish, conservation, species distribution, species detection, biodiversity monitoring

Jazyk práce: angličtina

Datum vytvoření / odevzdání či podání práce: 15. 12. 2022

Obhajoba závěrečné práce

• Vedoucí: RNDr. Petr Blabolil, Ph.D.

JIHOČESKÁ UNIVERZITA V ČESKÝCH BUDĚJOVICÍCH

Přírodovědecká fakulta

Bakalářský studijní program / obor:
Applied Informatics / Bioinformatics