Influence of Clustal W hyperparameters in multiple sequences alignment for AlignRUDDER – Marlene GANZ
Marlene GANZ
Bachelor's thesis
Influence of Clustal W hyperparameters in multiple sequences alignment for AlignRUDDER
ClustalW, Multiple Sequence Alignment, Reinforcement learning, Influence of Clustal W hyperparameters in mutiple sequences alignment for AlignRUDDER
Abstract:
Reinforcement learning algorithms suffer from the delayed reward problem and usually only perform well when being trained with vast amounts of data. AlignRUDDER overcomes this problem by using a multiple sequence alignment for the initialization performed with ClustalW. In this thesis we work with different datasets and AlignRUDDER to search for optimal align ment hyperparameters for reinforcement …moreAbstract:
Reinforcement learning algorithms suffer from the delayed reward problem and usually only perform well when being trained with vast amounts of data. AlignRUDDER overcomes this problem by using a multiple sequence alignment for the initialization performed with ClustalW. In this thesis we work with different datasets and AlignRUDDER to search for optimal align ment hyperparameters for reinforcement …more
Language used: English
Date on which the thesis was submitted / produced: 17. 3. 2021
Thesis defence
- Supervisor: prof. Dr. Sepp Hochreiter
Citation record
ISO 690-compliant citation record:
GANZ, Marlene. \textit{Influence of Clustal W hyperparameters in multiple sequences alignment for AlignRUDDER}. Online. Bachelor's thesis. České Budějovice: University of South Bohemia in České Budějovice, Faculty of Science. 2021. Available from: https://theses.cz/id/o65zkh/.
The right form of listing the thesis as a source quoted
GANZ, Marlene. Influence of Clustal W hyperparameters in multiple sequences alignment for AlignRUDDER. Č. Budějovice, 2021. bakalářská práce (Bc.). JIHOČESKÁ UNIVERZITA V ČESKÝCH BUDĚJOVICÍCH. Přírodovědecká fakulta
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Institution archiving the thesis and making it accessible: JIHOČESKÁ UNIVERZITA V ČESKÝCH BUDĚJOVICÍCH, Přírodovědecká fakultaUNIVERSITY OF SOUTH BOHEMIA IN ČESKÉ BUDĚJOVICE
Faculty of ScienceBachelor programme / field:
Applied Informatics / Bioinformatics
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